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AtpB RNA motif

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atpB
RF02916.svg
Consensus secondary structure and sequence conservation of atpB RNA
Identifiers
SymbolatpB
Rfam RF02916
Other data
RNA type Cis-reg
SO SO:0005836
PDB structures PDBe

The atpB RNA motif is a conserved RNA structure that was discovered by bioinformatics. [1] atpB motifs are found in Corynebacteriaceae.

These RNAs are consistently located upstream of atpB genes, which encode a protein that is part of ATP synthase. Therefore, it is possible that atpB RNAs regulate these genes as cis-regulatory elements.

References

  1. Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR (October 2017). "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Research. 45 (18): 10811–10823. doi:10.1093/nar/gkx699. PMC   5737381 . PMID   28977401.
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